Update Checkout Design
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Click on Online Store > Theme > Customization
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Click on 'Theme Settings' in left most bar
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Click the 'Checkout' option from the list
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You can see the settings available for the checkout
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To upload the logo in header
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In logo > Custom image, click on 'Select Image'
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Upload the logo
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Update the position in Logo > Position ,as needed

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Click on Save button
 
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To update the color in the checkout page
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In Main content area, click on the Background color
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Select the desirable color for main content section

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In Order Summary, click on the background color
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Select the desirable color for order summary section
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Click on Save button
 
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Update checkout setting
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If you are in home page, click on the Settings option in the bottom of the page

OR. if you are in Theme Setting > Checkout page already, click on the 'Visit the admin ' link in Checkout Settings.
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Update the configurations as required
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Click on Save button.
 
